𝕋he ARIC model for MetaXcan is in Box: https://uchicago.box.com/s/3sf4y4gv6c7zam0l5fxicpcd3zji5wzc […] The Atherosclerosis Risk in Communities Study (ARIC) generated genotype and proteomic data from a total of 9,084 participants (7,213 European Americans and 1,871 African Americans). The … Read more →

𝕎e have access to dataset JGAS000114 from the Biobank Japan Project. This includes: […] See list of phenotypes and more details here Read more →

** Note that this content was copied from the Berkely Statistics Website Original article linked here Library Path Management First, note that in general, the administrators of the High Performance Computing clusters will install an R package on the system. However, you can also install packages … Read more →

𝔸dding the cytogenetic to genes is convenient because it provides a somewhat memorable names for the genomic region where the gene is located. Biomart package in bioconductor has the database and function for the annnotation. suppressMessages(library(tidyverse)) suppressMessages(library(glue)) … Read more →

𝕋o keep track of traffic to blogdown (hugo-based) webpages in google analytics, follow the steps below See Google’s instructions here. Briefly […] Copy the global site tag, which is several lines of code that you need to paste into each webpage you want to measure. Below is the code for … Read more →

𝕄ismatch between the model SNP ids and geneotype/gwas SNP ids, e.g using model rsids to match with genotype variant_ids […] When having different genome builds use chr{}{}{}_{}_b38" for the –on_the_fly_mapping argument. This parameter specifies a format string to be used when … Read more →

𝕋o get a list of SNPs and the corresponding weights to predict expression levels (or splicing) of a given gene, you will first need to download the databases where the prediction models are stored. For example, you can download them from here more specifically from this tar file On CRI they are … Read more →

𝕋his is a short tutorial on how to download ld block data as summarized by Berisa and Pickrell. The LD data is available in hg19 genome build and for three different populations i.e. AFR, ASN and EUR. First download the data from the bit bucket repository git clone … Read more →

𝕐anyu’s notes on uploading to zenodo Read more →

𝕋his page contains description on how to map CRI storage to your computer. Depending on the operating system you are using there are different approaches. Which are shown below; […] sudo apt-get install sshfs Create the mount point # Create the mountpoint [festus@ubuntu ~ ]$ mkdir ~/im-lab … Read more →