PrediXcan
Error: 0 % SNPs used
2021-07-20
Festus
𝕄ismatch between the model SNP ids and geneotype/gwas SNP ids, e.g using model rsids to match with genotype variant_ids
[…] When having different genome builds use chr{}{}{}_{}_b38" for the –on_the_fly_mapping argument. This parameter specifies a format string to be used when …
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How to interpret a p-value of 0
2020-12-01
Haky Im
𝔸 p-value of zero should be interpreted as an extremely small positive value.
S-PrediXcan or PrediXcan will provide the zscore as well as the p-value. You can calculate the p-value corresponding to the Zscore using the formula below. For example a Zscore of 30 will give you a (natural) log p-value …
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