PrediXcan
Error: 0 % SNPs used
20210720
Festus
𝕄ismatch between the model SNP ids and geneotype/gwas SNP ids, e.g using model rsids to match with genotype variant_ids
[…] When having different genome builds use chr{}{}{}_{}_b38" for the –on_the_fly_mapping argument. This parameter specifies a format string to be used when …
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How to interpret a pvalue of 0
20201201
Haky Im
𝔸 pvalue of zero should be interpreted as an extremely small positive value.
SPrediXcan or PrediXcan will provide the zscore as well as the pvalue. You can calculate the pvalue corresponding to the Zscore using the formula below. For example a Zscore of 30 will give you a (natural) log pvalue …
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